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AT5G65740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Fanconi anemia complex, subunit FancL, WD-repeat region (InterPro:IPR019162); Has 162 Blast hits to 162 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YC2UeggNOG:KOG3268EMBL:AK317475EMBL:BT025646
EMBL:CP002688EnsemblPlants:AT5G65740EnsemblPlants:AT5G65740.1EnsemblPlants:AT5G65740.3
entrez:836703ExpressionAtlas:Q1ECQ9Gene3D:3.30.40.10GeneID:836703
GO:GO:0004842GO:GO:0006281GO:GO:0008270GO:GO:0043240
Gramene:AT5G65740.1Gramene:AT5G65740.3hmmpanther:PTHR13206hmmpanther:PTHR13206:SF0
InterPro:IPR013083InterPro:IPR019162InterPro:IPR026848InterPro:IPR026850
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-PANTHER:PTHR13206:SF0
Pfam:PF09765Pfam:PF11793Proteomes:UP000006548RefSeq:NP_001032153.1
RefSeq:NP_201375.2SMR:Q1ECQ9STRING:3702.AT5G65740.2SUPFAM:SSF57850
TAIR:AT5G65740UniGene:At.28894unipathway:UPA00143UniProt:Q1ECQ9
Coordinates (TAIR10) chr5:-:26301702..26302892
Molecular Weight (calculated) 24797.40 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.41
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MFTLEWSTSS RLKDVMHQFQ KHLDYLQEFW SVLDNIDKSL CVVDVKQPAR ASAIRRIDAG NDCIIIVHID FKDPKSLPES RFIGPVPSAT HMNNLHMLWR
101: RNCKRWSNER SFPENLECIL GTELPKPLGL QVEDDQQQVE CGICYAQFLP TDEELGARSG TRTDYTCENI SCNKSFHSLC LTDWLRSITT TRQSFDVLFG
201: NCPYCSDPVA VKTSNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)