AT5G65740.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : zinc ion binding | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Fanconi anemia complex, subunit FancL, WD-repeat region (InterPro:IPR019162); Has 162 Blast hits to 162 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:26301702..26302892 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 24797.40 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.23 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
Length | 216 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFTLEWSTSS RLKDVMHQFQ KHLDYLQEFW SVLDNIDKSL CVVDVKQPAR ASAIRRIDAG NDCIIIVHID FKDPKSLPES RFIGPVPSAT HMNNLHMLWR 101: RNCKRWSNER SFPENLECIL GTELPKPLGL QVEDDQQQVE CGICYAQFLP TDEELGARSG TRTDYTCENI SCNKSFHSLC LTDWLRSITT TRQSFDVLFG 201: NCPYCSDPVA VKTSNK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)