AT5G65540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 6825 Blast hits to 3811 proteins in 289 species: Archae - 0; Bacteria - 184; Metazoa - 2139; Fungi - 760; Plants - 816; Viruses - 52; Other Eukaryotes - 2874 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26195710..26198112 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 68741.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.87 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||
| Length | 605 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALLGDDGRG FDLARKLEVS GVWRTWLGDS IYSSFHHYLS SPSTWEAFMR VDESKSRAQI QLQLRVRALL FDKATVSLFL RSNTIAASSS SSASISDVSS 101: VAVSKLNPNY LQLHGDDVYY TLENASLESG FQREGGIRHN PSLTKSLSKP SFTSGTRGSE SDFSNLSQRS RFEELPDTWY TQFISRYGFK YGMSVGGQES 201: DKRTPEGMST YLRVVDTHKR KRAPFLEDRS LAHMSRSSTH PSSGFDGSTS EDDILFLPET MFRMNCVPET ALSPITRTQD NLKTEFYGVL DTLPQVTTRS 301: HIMIERLGLM PEYHRMEERG VLRSRKAEKM GFSDDQAALV SRKVVARMLL TMGFEGATEV PIDVFSQLVS RHMSKLGRIL KLLTDSYKKE CSAMQLIKMF 401: LNTTGYSNLG SLAEIVKDGT RNHPPPNQKQ PQVLQQQLHL QQQASLRLPQ QIQRQMHPQM QQMVNPQNFQ QQQQLERMRR RPVTSPRPNM DMEKDRPLVQ 501: VKLENPSEMA VDGNAFNPMN PRHQQQLQQQ LRQQQQIAAM SNMQQQPGYN QFRQLASMQI PQMQTPTLGT VRAQPVKVEG FEQLMGGDSS LKHDSDDKLR 601: SPPTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)