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AT5G65050.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AGAMOUS-like 31
Curator
Summary (TAIR10)
Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.
Computational
Description (TAIR10)
AGAMOUS-like 31 (AGL31); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G65060.1); Has 6764 Blast hits to 6759 proteins in 854 species: Archae - 0; Bacteria - 0; Metazoa - 623; Fungi - 300; Plants - 5766; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:EU998959EnsemblPlants:AT5G65050
EnsemblPlants:AT5G65050.2entrez:836629ExpressionAtlas:C0J8S0GO:GO:0003700
GO:GO:0005634hmmpanther:PTHR11945hmmpanther:PTHR11945:SF221InterPro:IPR002487
ncoils:CoilPaxDb:C0J8S0Pfam:PF00319Pfam:PF01486
Pfscan:PS50066Pfscan:PS51297PROSITE:PS51297scanprosite:PS00350
STRING:3702.AT5G65050.3tair10-symbols:AGL31tair10-symbols:MAF2UniProt:C0J8S0
Coordinates (TAIR10) chr5:+:25982415..25985743
Molecular Weight (calculated) 19981.90 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.52
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRKKVEIKR IENKSSRQVT FSKRRNGLIE KARQLSILCE SSIAVLVVSG SGKLYKSASG DNMSKIIDRY EIHHADELEA LDLAEKTRNY LPLKELLEIV
101: QSKLEESNVD NASVDTLISL EEQLETALSV TRARKTELMM GEVKSLQKTE NLLREENQTL ASQVTKTSLE ANSSVDTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)