AT5G65050.2
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : AGAMOUS-like 31 | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function. | ||||||||||||||||||||||||
Computational Description (TAIR10) |
AGAMOUS-like 31 (AGL31); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G65060.1); Has 6764 Blast hits to 6759 proteins in 854 species: Archae - 0; Bacteria - 0; Metazoa - 623; Fungi - 300; Plants - 5766; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:25982415..25985743 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 19981.90 Da | ||||||||||||||||||||||||
IEP (calculated) | 6.56 | ||||||||||||||||||||||||
GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||
Length | 178 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGRKKVEIKR IENKSSRQVT FSKRRNGLIE KARQLSILCE SSIAVLVVSG SGKLYKSASG DNMSKIIDRY EIHHADELEA LDLAEKTRNY LPLKELLEIV 101: QSKLEESNVD NASVDTLISL EEQLETALSV TRARKTELMM GEVKSLQKTE NLLREENQTL ASQVTKTSLE ANSSVDTQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)