AT5G64960.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.963 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cyclin dependent kinase group C2 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cyclin dependent kinase group C2 (CDKC2); FUNCTIONS IN: kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, nuclear body, nucleus, microtubule, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase C;1 (TAIR:AT5G10270.1); Has 123595 Blast hits to 117864 proteins in 4086 species: Archae - 72; Bacteria - 13038; Metazoa - 48540; Fungi - 13012; Plants - 28885; Viruses - 501; Other Eukaryotes - 19547 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25956150..25958427 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51322.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.59 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTYISVFIVC MEFPITAIRE IKILKKLHHE NVIHLKEIVT SPGRDRDDQG KPDNNKYKGG IYMVFEYMDH DLTGLADRPG LRFTVPQIKC YMKQLLTGLH 101: YCHVNQVLHR DIKGSNLLID NEGNLKLADF GLARSYSHDH TGNLTNRVIT LWYRPPELLL GATKYGPAID MWSVGCIFAE LLNGKPILPG KTENEQLNKI 201: YELCGSPDES NWPGVSKMPW YNQMKSSRPL KRRVREIYRH FDRHALELLE KMLVLDPSQR ICAKDALDAE YFWTDPLPCD PKSLPTYESS HEFQTKKKRQ 301: QMRHNEEAAK KQKLQHPQQQ HSRLPPQQHG VGQSHAAPLW PAGPNHPMNN NAPPPQIPAG GHYYGGKPRG GAPVPNRYPP SGNQTGGYNN QSRGGYSSGA 401: YPPQGRGAPY GAGPRGPSGG YGVGPPNYSQ GGGQYGGSGG SGRGQNPMGG ARNQQYGWQP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)