AT5G63730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : IBR domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes ARIADNE14 (ARI14), a putative ubiquitin E3 ligase. ARI14 and an inversely transcribed gene KPL generate a sperm-specific natural cis-antisense siRNA pair. In the absence of KPL, ARI14 RNA levels in sperm are increased and fertilization is impaired. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARIADNE 14 (ARI14); FUNCTIONS IN: zinc ion binding; INVOLVED IN: Regulation of double fertilization forming a zygote and endosperm; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G63750.1); Has 1137 Blast hits to 1133 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 455; Fungi - 119; Plants - 327; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25508100..25509706 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59012.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.63 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEYDGRRPYS VLTRNEITVK MKKQINEISD IFFISNSDAT VLLMYLRWDS LRVSERLGEN KEKLLMDSGL KSVMIDPSPD SSSEISLETD VYEFDGDNDL 101: ISMPFCSHKF DSKYWREYLE KNFYYVEKIQ TTISCPDQDC RSAVGPDTIE KLTVRDQEMY ERYIWRSYIE GNKVLMIKQC PARNCDYVIE FHQENDDDDE 201: YSLNVVCICG HIFCWRCRLE SHRPVSCNKA SDWLCSATMK ISDESFSLYP TKTKTVTCPH CLCSLESDTK MPQFLTCVCR LRFCSRCLRS EEAHKIEAVD 301: SGFCIKTEVG ILCEDRWNVC QKLLEQAKSD LEAFEETNIK KPSDLLREQD IMIIREGLML IVQCRRVLKW CCVYDYFHTE YENSKEYLRY LQGNAIATLQ 401: SYSNTLQEQK DIVLAAATYE ECTFFRHTIP TATSNIGNYF YDFMKTLQDG LVDVKVKSYN GGTGPFWYCD RCTYANTWED NECEMCYDDS ASLVGEISDL 501: FLNKVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)