AT5G63540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.902 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF1767) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes RMI1. Suppresses somatic crossovers. Essential for resolution of meiotic recombination intermediates. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RECQ MEDIATED INSTABILITY 1 (RMI1); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G19950.3); Has 297 Blast hits to 286 proteins in 91 species: Archae - 0; Bacteria - 10; Metazoa - 136; Fungi - 20; Plants - 89; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25441033..25444373 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69974.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRRRRLQLRY SSDEEEEDET GTSGVGDSVQ SFGIASSIQP ETSVSSNSNP NPGERIAISE VEIIDVFGNP QPTPPDSSIP TPYPVYPSES VSGNDYESPI 101: SEVLSRMGIK LKREWWVSCL SGLETSIPQF SYLDVAAKAK HCFEQFMFFD MNLCGGGVLP PNVASMNRIE LAGPFVLQVD EIVNIGCPLK GRYENANAGL 201: KRCLKLSMTD GVQRVFGMEY RPIKDLQVLA PAGLKIVVSS VQVRHGLLML VPEIVEVLGG MVEELEEARK RLVVEVNKPP RGKRTRVGVV PSLTTRATLA 301: AWSLNGNDTG NHVHDTGNHV NSSASGNASH TQANQGIPVH VTRTHNSSRA MDEPLASTNV GATVSRVEHM QIDTASAHGE RTFSDIHSTS SNIHRAASTA 401: GTGTSCSGAC SGARSFANNV GGNSLDQTSN VTSFVEEMHI DTGRVRDTTT HIYGSDSGGV AAEFSNMVVD LEGPSVLSTN TEKPFTYLAE LSQKWAVMKD 501: TIHFVQGRIK CFLTGVKKFQ FKQQSTYELL CYVDDGSLIC EILLHNDVVQ KRIGHSSMEV TAALSSSAPT SLNAMMKEKL KRFQLFLADF EGIMVVEMNR 601: SSQYPVAIEM NQGCSLTDAR LLLDRIKSSS RTSSSLNPVV VLSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)