AT5G63190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.984 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MA3 domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 1948 Blast hits to 791 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1230; Fungi - 12; Plants - 571; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25346145..25348563 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77560.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 702 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASGEGILTD GQWKKLEIAT HNSGSLSSSP KSHTLFADLN IKSPTGGKGP VAGIPNRHVR RTHSGKHIRV KKEGAGGKGT WGKLLDTDDG DSCIDKNDPN 101: YDSGEDAYDG LVDSPVSDPL NDYKKSVVSI IDEYFSTGDV KVAASDLREL GSSEYHPYFT KRLVSMAMDR HDKEKEMASV LLSALYADVI LPDQIRDGFI 201: RLLRSVDDLA VDILDAVNVL ALFIARAIVD EILPPVFLVR SKKILPESCK GFQVIVTAEK SYLSAPHHAE LVEKKWGGST HTTVEETKKK ISEILKEYVE 301: NGDTYEACRC IRELGVSFFH HEVVKRALVL AMDSPTAESL VLKLLKETAE EGLISSSQMV KGFFRVAESL DDLALDIPSA KKLFDSIVPK AISGGWLDDS 401: FKITSDQDGE KSSQDGKLRQ YKKDTVNIIQ EYFLSDDIPE LIRSLQDLGA PEYNPVFLKR LITLALDRKN REKEMASVLL SALHMELFST EDFINGFIML 501: LESAEDTALD IMDASNELAL FLARAVIDDV LAPLNLEDIS TKLPPKSTGT ETVRSARSLI SARHAGERLL RSWGGGTGWI VEDAKDKISK LLEEYETGGV 601: TSEACQCIRD LGMPFFNHEV VKKALVMAME KQNDRLLNLL EECFGEGLIT TNQMTKGFGR VNDSLDDLSL DIPNAKEKFE LYASHAMDNG WILPEFGISA 701: TQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)