AT5G62970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.456 golgi 0.260 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein with RNI-like/FBD-like domains | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT5G56410.1); Has 1498 Blast hits to 1454 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 1469; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25272033..25273537 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51881.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 449 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKISGFSDD ELLVKILSFL PFKFAITTSV LSKQWKFLWM RVPKLEYDED SMYSFEYSFR YFLPKAKEVD SETYSIVSES GHRMRSFIEK NLPLHSSPVI 101: ESLRLKFFTE VFQPEDIKLW VEIAVSRCAQ ELSVDFFPKE KHNALLPRNL YTCKSLVTLK LRNNILVDVP HVFSLPSLKI LHLERVTYGD GESLQRLLSN 201: CSVLEDLVVE LDTGDNVRKL DVIIPSLLSL SFGMSRYCAY EGYRIDTPSL KYFKLTDLSK TFSGLIENMP KLEEANITAR HNFKKLLELV TSVKRLSLNI 301: ENNDAEALTA IYGDDIVFNE LEHLNFHIHN AYWSELLYWL LKASPKLQNL EFDEQCSRDG TMGTLAVFWN QPNSVPQCLL STLQTFEWSG YPGSVQGKDL 401: ATYILRKSRQ LKIATISIGY GLDPQQKLKM EMDVKFSFRA SPTCKRVFY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)