AT5G62780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.756 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chaperone DnaJ-domain superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G37750.1); Has 1795 Blast hits to 1768 proteins in 366 species: Archae - 25; Bacteria - 283; Metazoa - 608; Fungi - 199; Plants - 414; Viruses - 5; Other Eukaryotes - 261 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25213386..25214137 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22938.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.50 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||
| Length | 207 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMINVYISAS NKEEGESDWY GILGVDPLAD DETVKKHYKT LALLLHPDKN RFNGAEEPAS SSSSKPVDMT FSTVSMTFST VCNKCTTRCC HFSTQNHLNK 101: TFPCPNCGQN SAMTNISSTE VINGRTFIRV SVSPQQEEPS RANSQATSRR STRHDDANST ESFFKKPMPT TGDANSTHEA QRLFKNPMTT TGDANSTHEA 201: QRLFKNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)