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AT5G62490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HVA22 homologue B
Curator
Summary (TAIR10)
Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.
Computational
Description (TAIR10)
HVA22 homologue B (HVA22B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue A (TAIR:AT1G74520.1); Has 1456 Blast hits to 1456 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 663; Fungi - 209; Plants - 491; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5052eggNOG:KOG1725EMBL:AB015469EMBL:AF141660
EMBL:AF141980EMBL:AK118234EMBL:BT005579EMBL:CP002688
EnsemblPlants:AT5G62490EnsemblPlants:AT5G62490.1entrez:836369GeneID:836369
Genevisible:Q9SYX7GO:GO:0009737GO:GO:0016021GO:GO:0042538
Gramene:AT5G62490.1hmmpanther:PTHR12300hmmpanther:PTHR12300:SF52HOGENOM:HOG000241758
InParanoid:Q9SYX7InterPro:IPR004345KEGG:ath:AT5G62490OMA:VWYVPAK
PANTHER:PTHR12300PaxDb:Q9SYX7Pfam:PF03134Pfam:Q9SYX7
PhylomeDB:Q9SYX7PRIDE:Q9SYX7PRO:PR:Q9SYX7Proteomes:UP000006548
RefSeq:NP_201055.1STRING:3702.AT5G62490.1TAIR:AT5G62490tair10-symbols:ATHVA22B
tair10-symbols:HVA22BUniGene:At.9305UniProt:Q9SYX7
Coordinates (TAIR10) chr5:+:25090206..25091345
Molecular Weight (calculated) 18742.50 Da
IEP (calculated) 6.97
GRAVY (calculated) 0.17
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSGIGSLVK VIFKNFDVIA GPVISLVYPL YASVRAIESR SHGDDKQWLT YWALYSLIKL FELTFFRLLE WIPLYPYAKL ALTSWLVLPG MNGAAYLYEH
101: YVRSFLLSPH TVNVWYVPAK KDDDLGATAG KFTPVNDSGA PQEKIVSSVD TSAKYVGHSA FDDAYIY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)