AT5G61730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC2 homolog 11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of ATH subfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ABC2 homolog 11 (ATH11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 15 (TAIR:AT5G61690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24803583..24807898 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104500.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.85 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 940 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLREGLPLF HQQFTALFKK NLLLSWRNKR ATCLHLFSSF FFILLIFSIE ESSKASDLTS TRHKNVTDPK ALVSLPILPC EDKFFVRLPC FDFVWSGNQS 101: RRVTDIVSAI MANNPGRPIP TNKVQSFTKP EEVDAWFMSH PSQVTGALHF VEKNATVISY GIQTNSSSEK KRGRREDPTF KFLVPLQIAA EREIARSLIG 201: DPKFSWDFGF KEFARPAIGG EVIISAFYLM GPVFFLAFSM FGFVLQLGSV VTEKELKLRE AMTTMGVYES AYWLSWLIWE GILTFVSSLF LVLFGMMFQF 301: EFFLKNSFVL VFLLFFLFQF NMIGLAFALS SIISKSSSAT TVGFLVFLVG FITQIVTTAG FPYSSAYSIG SRVIWSLFPP NTFSAGLQLL LEATSSPGDS 401: GISWSERAIC AGGESTCVIT TNKIYIWLVG TFFFWFVLAL YFDNIIPNAS GVRKSIFYFL KPSYWTGKEG NKVEVPPVEH ITPEDEDVLE EEILVKQQAM 501: DGRVDPNIAV QIHGLAKTYP GTTKLGCCKC TKTSPFHAVK GLWMNIAKDQ LFCLLGPNGA GKTTTISCLT GINPVTGGDA KIYGNSIRSS VGMSNIRKMI 601: GVCPQFDILW DALSSEEHLH LFASIKGLPP SSIKSIAEKL LVDVKLTGSA KIRAGSYSGG MKRRLSVAIA LIGDPKLVFL DEPTTGMDPI TRRHVWDIIQ 701: ESKKGRAIIL TTHSMEEADI LSDRIGIMAK GRLRCIGTSI RLKSRFGTGF VATVSFIENK KDGAPEPLKR FFKERLKVEP TEENKAFMTF VIPHDKEQLL 801: KGFFAELQDR ESEFGIADIQ LGLATLEEVF LNIARRAELE SATVEGTMVT LELESGIAVE IPVGARFVGI PGTENAENPR GLMVEVYWQQ DGSGSMCISG 901: HSAEMRIPEN VSVIYEPSSQ VLGHGQRRVR GIVIDYESNN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)