AT5G61720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1216) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24801621..24803006 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43171.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.88 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||
| Length | 390 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKISLAICL TLLVTLSTVY ETQGTFSLPL YLKNFPKLGK DYEAFANKGI SDFLGDLEGM CPKTAEFKDF FENLKDYMAF FNSAAPGSKD NQFEMFVKSE 101: KLFKALSAFN SSKGGTSEDS WKLVDGLLSM GKGLVEMKKS GSKEITFEER RDLISSMVKW ARAIGLFVKA ASEDKGQSID LASFGIDYDN NVESPFSKRA 201: MYETQGTFSL PHYVKNTPKM GKAIEPFAYK GMSDFLGSLE SKCPATPEFK DFFVKLEDYM ACFKLVSPES KFEMAVKSDK LFTAMISLDG TKGGSVDSWR 301: MLDGMLSMGK VLVDIKKSGS KEITFEQRRD LISSMVKWAR AIGLFVKAAS ERKGKSIDLA PFGIDYENNV GNGKGNFRTG PVLIDDGSEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)