AT5G61690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.961 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC2 homolog 15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of ATH subfamily | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ABC2 homolog 15 (ATH15); CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 11 (TAIR:AT5G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24789495..24793487 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101174.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 919 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILQEGLPLL YQQFTALFGK NLLLSWRNKR ATCLQIFSSF FFILLIFCIE EAMKASDASS SAYKNITDPT LLVSPPILPC EDKFFVKLPC YDFVWSGNNS 101: RRVTDIVSAI MANNPGRPIP TNKVQSFKEP DEVDTWLLSH PLQVPGALHF VERNASVISY GVQTNSSSES KRGQTEDPTF KFLVPLQVAA EREIARSLLG 201: DPNFGWGLGF KEFARPAIIT ETTSALSVMG PVFFLAFSMF GFVLQLGALV TEKELKLRQA MTMMGVYDSA YWLSWLTWEG ILTLVSSLFL VLFGMIFRFD 301: FFLKNSFVLV FLLFLLFQFN MIGLAFALSS IISKSSSATT VGFLVFLIGF ITQFVSATGF PYSSSYAVSR RVMWSLFPPN TFSAGLKLLL DATSTPKSSG 401: ISWSNRANII YQWLLGTFLF WFVLAIYFDN IIPNASGVRK PIFYFLAPGY WTGKGGNKVE VPLVEHNTPN DKDVLEEETE VKQQAMDGIA DPNIAVQIHG 501: LAKTYPGTTK LGCCKCTKTS PFHAVKGLWM NIAKDQLFCL LGPNGAGKTT TISCLTGINP VTGGDALIYG DSIRSSVGIS NIRKMIGVCP QFDILWDALS 601: SEQHLHLFAS IKGLPPASIK STAEKLLADV KLTGAAKVRA GSYSGGMKRR LSVAVALIGD PKLTTGMDPI TRRHVWDIIQ ESKKGRAIIL TTHSMEEADI 701: LSDRIGIMAK GRLRCIGTSI RLKSRFGTGF VATVSFIENK NDNNIGVGAS HEPLKKFFKE HLKVEPTEEN KAFMTFVIPH DKENLLTLQN RESEFGISDI 801: QLGLATLEEV FLNIARQAEL ESATAEGNMV TLELASGISL EIPVGARFVG IPDTENAENP SGVMVEVYWQ QDGSGSMCIS GHSSEMRVPQ NVPVTRPPSP 901: NALGHKSLRQ GVRGIVIDL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)