AT5G61460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
hypersensitive to MMS, irradiation and MMC (MIM); FUNCTIONS IN: ATP binding; INVOLVED IN: double-strand break repair, sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 6A (TAIR:AT5G07660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24714551..24721841 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121786.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1057 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVKSGARASD SFIKQRSGSG SILRIKVENF MCHSNLQIEF GEWVNFITGQ NGSGKSAILT ALCVAFGCRA RGTQRAATLK DFIKTGCSYA VVQVEMKNSG 0101: EDAFKPEIYG GVIIIERRIT ESATATVLKD YLGKKVSNKR DELRELVEHF NIDVENPCVV MSQDKSREFL HSGNDKDKFK FFFKATLLQQ VNDLLQSIYE 0201: HLTKATAIVD ELENTIKPIE KEISELRGKI KNMEQVEEIA QRLQQLKKKL AWSWVYDVDR QLQEQTEKIV KLKERIPTCQ AKIDWELGKV ESLRDTLTKK 0301: KAQVACLMDE STAMKREIES FHQSAKTAVR EKIALQEEFN HKCNYVQKIK DRVRRLERQV GDINEQTMKN TQAEQSEIEE KLKYLEQEVE KVETLRSRLK 0401: EEENCFLEKA FEGRKKMEHI EDMIKNHQKR QRFITSNIND LKKHQTNKVT AFGGDRVINL LQAIERNHRR FRKPPIGPIG SHVTLVNGNK WASSVEQALG 0501: TLLNAFIVTD HKDSLTLRGC ANEANYRNLK IIIYDFSRPR LNIPRHMVPQ TEHPTIFSVI DSDNPTVLNV LVDQSGVERQ VLAENYEEGK AVAFGKRLSN 0601: LKEVYTLDGY KMFFRGPVQT TLPPLSRRPS RLCASFDDQI KDLEIEASKE QNEINQCMRR KREAEENLEE LELKVRQLKK HRSQAEKVLT TKELEMHDLK 0701: NTVAAEIEAL PSSSVNELQR EIMKDLEEID EKEAFLEKLQ NCLKEAELKA NKLTALFENM RESAKGEIDA FEEAENELKK IEKDLQSAEA EKIHYENIMK 0801: NKVLPDIKNA EANYEELKNK RKESDQKASE ICPESEIESL GPWDGSTPEQ LSAQITRMNQ RLHRENQQFS ESIDDLRMMY ESLERKIAKK RKSYQDHREK 0901: LMACKNALDS RWAKFQRNAS LLRRQLTWQF NAHLGKKGIS GHIKVSYENK TLSIEVKMPQ DATSNVVRDT KGLSGGERSF STLCFALALH EMTEAPFRAM 1001: DEFDVFMDAV SRKISLDALV DFAIGEGSQW MFITPHDISM VKSHERIKKQ QMAAPRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)