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AT5G61420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 28
Curator
Summary (TAIR10)
Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose.
Computational
Description (TAIR10)
myb domain protein 28 (MYB28); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 76 (TAIR:AT5G07700.1); Has 5906 Blast hits to 5134 proteins in 359 species: Archae - 0; Bacteria - 112; Metazoa - 464; Fungi - 135; Plants - 4393; Viruses - 3; Other Eukaryotes - 799 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G61420EnsemblPlants:AT5G61420.1entrez:836263hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF537Pfam:PF00249Pfscan:PS51294tair10-symbols:AtMYB28
tair10-symbols:HAG1tair10-symbols:MYB28tair10-symbols:PMG1
Coordinates (TAIR10) chr5:-:24689475..24690478
Molecular Weight (calculated) 32045.70 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.77
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MLHASRGNKW SVIARHLPRR TDNEIKNYWN THLKKRLMEQ GIDPVTHKPL ASSSNPTVDE NLNSPNASSS DKQYSRSSSM PFLSRPPPSS CNMVSKVSEL
101: SSNDGTPIQG SSLSCKKRFK KSSSTSRLLN KVAAKATSIK DILSASMEGS LSATTISHAS FFNGFTEQIR NEEDSSNTSL TNTLAEFDPF SPSSLYPEHE
201: INATSDLNMD QDYDFSQFFE KFGGDNHNEE NSMNDLLMSD VSQEVSSTSV DDQDNMVGNF EGWSNYLLDH TNFMYDTDSD SLEKHFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)