AT5G61050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : histone deacetylase-related / HD-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
histone deacetylase-related / HD-related; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24565482..24566615 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 27937.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.88 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||
| Length | 252 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMADKKYGN CDGKVAGKSQ QGTLVEKEQV DTASTSWRID LAKVDVWYAS YGSNMWKPRF ICYIQGGQAE GMIKACVGSM DKSPPKEIMW KTFPHRLLFG 101: RETSMFWGVG GVAYTNPLTN LNDQTHMCLY RITLEQFNDL LFQENELNVD SDYPFFDLAA LRLAEKEGSI SLQTASDSLY GNVVCLGKEG VIPILTLTCT 201: LSVVEKFKSG EIPIRPPAKA YANTLIRGLV KGGRFSIEEA EAYIDNAASK PL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)