AT5G61020.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.907 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : evolutionarily conserved C-terminal region 3 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
evolutionarily conserved C-terminal region 3 (ECT3); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1114 Blast hits to 1097 proteins in 185 species: Archae - 0; Bacteria - 6; Metazoa - 492; Fungi - 144; Plants - 353; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24557485..24559780 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54987.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.33 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||
| Length | 493 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANPDHVSDV LHNLSIDPTT KALAPDSETK GAYGGNGNDF LLNDELVEAT KIGKPSLLSK DGGVTKDKGS NLKKLGYQSA AYNAKGSYGK GAYAYGYYPP 101: AYQYPRHGYT GSYASGKTNL QYQYLTQQGR SAGNGQSYGG YMDNIYSNYG MCGPYTNGYG YGSYGYDSWK YMPNWYAVNN TYKPRNGYHG YGKENIEGLN 201: EMNRGPRAKG FNSQDGSKVM AVSLKEQRVT ETEKLSEDVS LLDPKDYNKI DFPETYTEAK FYVIKSYSED DIHKSIKYSV WSSTPNGNKK LDASYNEAKQ 301: KSDGCPVFLL FSVNTSGQFV GLAEMVGPVD FNKTVEYWQQ DKWIGCFPVK WHFVKDIPNS SLRHITLENN ENKPVTNSRD TQEVKLEQGI KVIKIFKDHA 401: SKTCILDDFE FYENRQKIIQ ERKSKHLQIK KQTLVANADK GVMSKINLVK PQESTTASED AAALGVAAEV TKESKVVKET ELPVEKNAVA TAC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)