AT5G60910.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGAMOUS-like 8 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
MADS box gene negatively regulated by APETALA1 | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AGAMOUS-like 8 (AGL8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, maintenance of inflorescence meristem identity, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 3783 Blast hits to 3782 proteins in 618 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 10; Plants - 3766; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24502736..24504934 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20512.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.68 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||
| Length | 180 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERILERYDR YLYSDKQLVG RDVSQSENWV LEHAKLKARV EVLEKNKRNF MGEDLDSLSL KELQSLEHQL DAAIKSIRSR KNQAMFESIS ALQKKDKALQ 101: DHNNSLLKKI KEREKKTGQQ EGQLVQCSNS SSVLLPQYCV TSSRDGFVER VGGENGGASS LTEPNSLLPA WMLRPTTTNE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)