AT5G60700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.859 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycosyltransferase family protein 2 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycosyltransferase family protein 2; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12260.1); Has 216 Blast hits to 215 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 2; Fungi - 65; Plants - 77; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24402329..24404729 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 76090.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.49 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||
| Length | 668 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIPGKKMLQM LSHVAGTEKY ENSVLGSIGR ILPFRQKDFT FPSYRKFRSK EAGLYLPDPA YDITLDRILQ VDFLSSSWFL SAELVKALFI EKPFTFSTGE 101: DLHLSYQLQK YRNAGSFVLP VDPNDKETWG DSEHRLAYVS ETTVIFKNIV EVRDNQWWKA LSTGYVTQWA AMYPQKIDAL FYAHSIDEVK ALGPLLEKFR 201: GTVGKKAYIA VSGGKFCPCE DAASALRWPK VVCKERRFKI FDLEVGAILG VSNSEVPVFQ AVYSSMKGLI KIHNPSVVIT VADADPNVKK ALKMATETNS 301: NGTALVLLPR ASISKVLWMA DLRSTALPNW NKMRVSVNII TQNRAQSLLR LLRSLSNAYY LGDEISLSFN MDSKVDEETI NVVSTFDWPH GPKTLRRRII 401: QGGLIRAVSE SWYPASDDDF GLLLEDDIEV SPYYFLWIKY ALLAYHYDPQ VSFPELSSIS LYTPKIVEVV KERPKWNPTD FFKQIHPHTP YLHQLPCSWG 501: AVFFPKQWRE FYVYMNMRFT ENAKANPVQI PKSRTNGWQA SWKKFLIDMM YLRGYVSLYP NFPNQSSFST NHMEPGAHIA AKDNVVKHNK TDFEVPLLMD 601: DFRNFLPNQK LPPLSKLPSL NLFNMPVSLK GLKAAGAKLG QDVLRCNNVS EIVAVNHQTG LPARCMKF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)