AT5G60220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetraspanin4 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of TETRASPANIN family | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tetraspanin4 (TET4); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin3 (TAIR:AT3G45600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24248957..24250065 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37179.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.48 | ||||||||||||||||||||||||||||||||
| Length | 327 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSRSNLIGL INFFTFLLSI PILGGGIWLS SRANSTDCLR FLQWPLIIIG ISIMVISLAG IAGACYQNKF LMWLYLFTMF FVIAALIGFT IFAYVVTDKG 101: SGRFVMNRRY LDYYLNDYSG WLKDRVTDNG YWRDIGSCVR DSGVCKKIGR DLNGVPETAH MFYFRNLSPV ESGCCKPPTD CGYTYVNETV WIPGGEMVGP 201: NPDCMLWNND QRLLCYQCSS CKAGVLGSLK KSWRKVSVIN IVVVIILVIF YVIACAAYQN VKRMYNDEPV GEARMTNLIL VIFKFKEILV QFFFGIVFLL 301: LFNGLMVCCC NDKFAFSVFF FGYVTYA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)