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AT5G60142.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AB026632EMBL:CP002688EnsemblPlants:AT5G60142EnsemblPlants:AT5G60142.1
entrez:6241172Gene3D:2.40.330.10GeneID:6241172GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT5G60142.1
hmmpanther:PTHR31920hmmpanther:PTHR31920:SF15InParanoid:Q9LST3InterPro:IPR003340
InterPro:IPR015300KEGG:ath:AT5G60142OMA:HFPEFINPaxDb:Q9LST3
Pfam:PF02362Pfam:Q9LST3Pfscan:PS50863PRO:PR:Q9LST3
PROSITE:PS50863ProteinModelPortal:Q9LST3Proteomes:UP000006548RefSeq:NP_001119463.2
SMART:SM01019SMR:Q9LST3SUPFAM:SSF101936TAIR:AT5G60142
UniGene:At.69355UniProt:Q9LST3
Coordinates (TAIR10) chr5:-:24216180..24217591
Molecular Weight (calculated) 40191.80 Da
IEP (calculated) 4.37
GRAVY (calculated) -0.75
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNRGISVDD CLPKFFKVYL PDDSGDDLEL PISFNSFLPK SLPKNVIVRS IYGNIWKVAF RKFCGDSERF VMVNGWKKIV KDEDLKGGEF LEFEFDGSWC
101: FNFCIYGRAT CKRLRSSVQI TVLDDNDDGF NDDQDYGEEV KSSENFIVLD DDDISDVQDY NEEDTSSEDI TALDDADNDD INDVQDYVEE DTSSEDIIVI
201: DDDDDDDDQD YGDDDHADVE KERWRGVKTE KKKKGSSGEH DRQYLDNHMN PFFTVNQHRQ IKYNMLRIPT KVITKYGLHF PEFINLIDPL EKNFGKLKRK
301: VKGQTIKGFR SIIRRNNVKL NDKVICELEK EMDGLVREIK VHVIRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)