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AT5G59950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:19329564 (2009): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.1); Has 10964 Blast hits to 9767 proteins in 726 species: Archae - 14; Bacteria - 1131; Metazoa - 5027; Fungi - 1686; Plants - 1961; Viruses - 34; Other Eukaryotes - 1111 (source: NCBI BLink).
Protein Annotations
BioGrid:21361eggNOG:ENOG4111JAWeggNOG:KOG0533EMBL:AB015475
EMBL:AY086704EMBL:AY136433EMBL:BT000217EMBL:CP002688
EnsemblPlants:AT5G59950EnsemblPlants:AT5G59950.1entrez:836117ExpressionAtlas:Q8L773
Gene3D:3.30.70.330GeneID:836117Genevisible:Q8L773GO:GO:0000166
GO:GO:0003723GO:GO:0005654GO:GO:0005730GO:GO:0051028
hmmpanther:PTHR19965hmmpanther:PTHR19965:SF29HOGENOM:HOG000239962InterPro:IPR000504
InterPro:IPR012677InterPro:IPR025715PaxDb:Q8L773Pfam:PF00076
Pfam:PF13865Pfam:Q8L773Pfscan:PS50102PhylomeDB:Q8L773
PRIDE:Q8L773PRO:PR:Q8L773PROSITE:PS50102ProteinModelPortal:Q8L773
Proteomes:UP000006548RefSeq:NP_851229.1SMART:SM00360SMART:SM01218
SMR:Q8L773STRING:3702.AT5G59950.5SUPFAM:SSF54928TAIR:AT5G59950
UniGene:At.23634UniProt:Q8L773
Coordinates (TAIR10) chr5:+:24140235..24141504
Molecular Weight (calculated) 25756.80 Da
IEP (calculated) 10.39
GRAVY (calculated) -1.03
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)