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AT5G59720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : heat shock protein 18.2
Curator
Summary (TAIR10)
encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.
Computational
Description (TAIR10)
heat shock protein 18.2 (HSP18.2); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21337eggNOG:COG0071eggNOG:KOG0710EMBL:AB006705
EMBL:AK228529EMBL:AY070385EMBL:AY088849EMBL:AY122948
EMBL:CP002688EMBL:X17295EnsemblPlants:AT5G59720EnsemblPlants:AT5G59720.1
entrez:836093Gene3D:2.60.40.790GeneID:836093Genevisible:P19037
GO:GO:0005737GO:GO:0009408GO:GO:0009644GO:GO:0010286
GO:GO:0042542Gramene:AT5G59720.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF152
HOGENOM:HOG000251751InParanoid:P19037IntAct:P19037InterPro:IPR002068
InterPro:IPR008978InterPro:IPR031107KEGG:ath:AT5G59720KO:K13993
OMA:FEGFFTPPANTHER:PTHR11527PaxDb:P19037Pfam:P19037
Pfam:PF00011Pfscan:PS01031PhylomeDB:P19037PIR:JQ0352
PRIDE:P19037PRO:PR:P19037PROSITE:PS01031ProteinModelPortal:P19037
Proteomes:UP000006548RefSeq:NP_200780.1SMR:P19037STRING:3702.AT5G59720.1
SUPFAM:SSF49764TAIR:AT5G59720tair10-symbols:HSP18.2UniGene:At.28612
UniProt:P19037
Coordinates (TAIR10) chr5:+:24062632..24063117
Molecular Weight (calculated) 18135.50 Da
IEP (calculated) 7.70
GRAVY (calculated) -0.66
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLIPSIFGG RRSNVFDPFS QDLWDPFEGF FTPSSALANA STARDVAAFT NARVDWKETP EAHVFKADLP GLKKEEVKVE VEDKNVLQIS GERSKENEEK
101: NDKWHRVERA SGKFMRRFRL PENAKMEEVK ATMENGVLTV VVPKAPEKKP QVKSIDISGA N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)