AT5G58880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.942 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23775966..23779504 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 122752.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.16 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||
| Length | 1088 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGIDTKEIIV ILWKILGYSM NMSIKFMINH PVLSGVSMFL LVLYIFLPSL FFFLIYTSPV LACALVYARE KLGLRFSSSY SEPKKSCGGE KRCHLKQQRS 0101: VRRNARMKVE EWDSQTSEEE KDKVILTSLY NDLLGRTPQF EESPKALETN VVEEEEDKEK EFLGEGVSRD LGHLNVEEPM VCNCEIKYGE SDGKVEMKQE 0201: MSNANEHGIS EIERNKRLES LIARRRARRR FRLALDQKNK LQAEETTSPR QNNTNNLHVT VSRNSLEKRR NNSSDGTTVK GLQIPGSAPS VMLQGRNPFD 0301: IPYDPQEERP NLTGDSFDQE FSLFNQKDLF FCRHESFCRF SLFSPEHVQC MNSPVSASDI STTRKRLDLE NEYIDHTEQN LPLNGKEATI EDDDKSVVSR 0401: KSEEKEVEMN DETDSNKEEC DDSSCSEESE SELCRLNKAE LREAICQSMD NNPGYLVNQA RNSIPSTLPR GIVAPRLDDN NMFYARKCGN SHSRTFSVAS 0501: DMQVEVSEIG SPPTTVDWLD DWSTGGESYI YDTDIDREIV RDEESRKRMS HQYESRSGIG SKEENSEPST KPEAKPDQDC VVDEDLITVD DMSLLDRRTQ 0601: SEEIFEQTPS SSSDVSKPTS SGRFEGMLFH TSASLSSITE EPETILDSID GVNSEIMNSL TGELTDQRPL TSLDLSMENL IDEEVADMQQ IENDDLCGSP 0701: KIIDFDIIDH QQTDQTSDSI QGEHEETKSF LDASLDTPFI ESFEREVQEE EESNLDKSTE ETTKETESDL KSSPGQVSTE LLESVVREEN GQELVKSADE 0801: KAMLVEEEKT HNVLEASSSN AHTQLVDLDY GNAENSSDVI LLQVQDSHKS PLDESVDQEI SKEVEKTELL KDFCGESTQE YKNRGNVEAC GNAENASDVL 0901: LLQVQDGNNS PLDESTDQEI SKEEEKTEVL KDFNDETPQG YKNRANVEEE SVVLADTQNS QDSQTWTQQC GIDSSQGISP RTLEITQQLE QDDVIASSSN 1001: TVSQDINKDI TAAVANDLAA SERNDEVILK LDEQVGEAME KELELNLESL HHNIGLVGRE DDEESKKVIE EMQNAEIQTT KHENRVLG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)