AT5G58610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PHD finger transcription factor, putative | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PHD finger transcription factor, putative; FUNCTIONS IN: RNA binding, DNA binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent, response to chitin; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT1G05380.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23686771..23691053 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121335.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.38 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1065 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGLFDCRVYR VFHFLNLLSN FGFFSRSLEE GSLGSWYLGT VTSAKKRRRR CIRYDNILSD DGSGNLVETV DVSDIVEGLD DCTDVSDTFR GRLRPVPPKL 0101: DVAKLNLAYG LCVDVFFSDA WWEGVLFDHE NGSEKRRVFF PDLGDELDAD LQSLRITQDW NEATETWECR GSWLFLDLIE IYKEYNYLPV SVKQLWYDIR 0201: DRIGFVRIQE WTCSTKHLWQ DLMLGVIEDN LKITIDQFLH DFDAERYPQL KLLNEASQAV YETNACLSGM LTIAPQEHQF SCIDKDFKPA SQRCQSLSVL 0301: TSVSGIRSEA SDINKATEIS SKKSTAAHKK DILHKKPGIW HPFDCLAKSG PQAVSSFIRS PLLPMAMHVR MHLKYMGWTI EHMVDEAGRQ RFRYLSPNGR 0401: LKEHSLRQVC FRLKQPDKSL TTPGMANPPS LSSENQTYST QEMRSIVLAL PAFNRSVALG EGLKLSTDTL LEYETQGNEE VFTRESRNFC PKKAFPGQKE 0501: TLRVRIEPKT KAQGIILRLK SKRKQTPKKD EVIVGLQNVN RSMRRGHTSK KLMDIKNRVT SRGKTRVLRS RKRAQRVITP ISRKHSPRNI LSWLMDNNVV 0601: LPRENIRCCN QKDTTVRKEG KLTREGIKCS CCRRVFTING FEVHANGASC SGAANIFLDD GRSLLECQVE AYKKRKKAQP PDMLKMKLRQ GENDVFCSVC 0701: HYGGKLILCD GCPSAFHANC LGLEDVPDGD WFCQSCCCGA CGQFFLKTTS TNAKEEKFIS CKQCELKYHP SCLRYDGACD SLDKILGEKW FCSKDCEESL 0801: EPNMYGDDAS KIEAAAENHC ILSVALDVMH ELFEPVKRPH GGRDLAEDVI FSRWSKFKRL NFSGFYTVLL ERNNELVSVA TVRILGKKVA EMPFIGTRFQ 0901: HRQRGMCRVL INELEKVLID LGVERLVLPA VPCVLNTWIN SFGFTKMTIS ERKNFLKFTL LEFGRTILCE KILIKSGVAD PIPSIASLGE QQCDILRIED 1001: NSASDDGSEV HQAEQHLEES RSTKNPPEYV VQTLTPLHHN PKTPTTRKKK HDTNALHGSW ERTNT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)