AT5G58460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.524 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/H+ exchanger 25 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 25 (CHX25); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 24 (TAIR:AT5G37060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23632361..23635037 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95838.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.24 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||||||
| Length | 857 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRSFPSDGW SALPTRFGFW PENPTTAGVV SSRVFSARLP EVCRQVHDKQ PFGMFKGENG MNYTFSTFLI EAILIIFFIK IVYVLLRPLR QPRIVCEIIG 101: GMMIGPSMLG RNRNFNYYLF PPIANYICAN IGLMGFFYFF FLTAAKTDVA EIFKAPRKHK YIAAVSVLVP IACVGSTGAA LKHKMDIRLQ KPSSIGGVTF 201: ALGFTSFPVI YTVLRDMNLL NSEIGKFAMS VTLLGDMVGV YVLVLFEAMA QADGGGGAYS VIWFLISAAI MAACLLLVVK RSFEWIVAKT PEGGLVNQNY 301: IVNILMGVLV SCFLTDMFGM AIAVGPIWLG LVVPHGPPLG STLAIRSETF VNEFLMPFSF ALVGQKTNVN LISKETWPKQ ISPLIYMSIV GFVTKFVSST 401: GAALFFKVPT RDSLTLGLMM NLRGQIDILL YLHWIDKQMV GLPGYSVMVL YAIVVTGVTA PLISFLYDPT RPYRSSKRRT IQHTPQNTET GLVLAVTDHD 501: TFSGLITFLD FAYPTKTSPF SVFAIQLVEL EGRAQPLFIA HDKKREEEYE EEEEPAERMG SRRVDQVQSA FKLYQEKRSE CVTMHAYTAH ASKHNMYQNI 601: CELALTKKTA FILLPYQKER LQDAALTELR DSGMLSVNAD VLAHTPCSVC IYYEKGRLKN AMVRSSMDPQ HTTNSSHMRQ EMYRFVVLFL GGADNREALH 701: LADRMTENPF INLTVIRFLA HNHEGEDERE KKLDDGVVTW FWVKNESNAR VSYKEVVVKN GAETLAAIQA MNVNDYDLWI TGRREGINPK ILEGLSTWSE 801: DHQLGVIGDT VAGSVFASEG SVLVVQQQVR NQMGGDGFLN GKFDYKKLVS PWSHSHN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)