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AT5G58240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FRAGILE HISTIDINE TRIAD
Curator
Summary (TAIR10)
Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities.
Computational
Description (TAIR10)
FRAGILE HISTIDINE TRIAD (FHIT); CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad, conserved site (InterPro:IPR019808), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); Has 5210 Blast hits to 5210 proteins in 1676 species: Archae - 233; Bacteria - 3245; Metazoa - 250; Fungi - 213; Plants - 74; Viruses - 2; Other Eukaryotes - 1193 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0537eggNOG:KOG3379EMBL:CP002688EnsemblPlants:AT5G58240
EnsemblPlants:AT5G58240.1entrez:835936ExpressionAtlas:F4KEV7Gene3D:3.30.428.10
GeneID:835936GO:GO:0005829GO:GO:0043530GO:GO:0047627
Gramene:AT5G58240.1hmmpanther:PTHR23089hmmpanther:PTHR23089:SF19InterPro:IPR001310
InterPro:IPR011146InterPro:IPR019808KEGG:ath:AT5G58240KO:K01522
ncoils:CoilOMA:WANNDDIPANTHER:PTHR23089PaxDb:F4KEV7
Pfam:PF01230Pfscan:PS51084PRIDE:F4KEV7PROSITE:PS00892
PROSITE:PS51084ProteinModelPortal:F4KEV7Proteomes:UP000006548RefSeq:NP_200632.2
scanprosite:PS00892SMR:F4KEV7STRING:3702.AT5G58240.1SUPFAM:SSF54197
TAIR:AT5G58240tair10-symbols:FHITUniGene:At.49185UniGene:At.66738
UniProt:F4KEV7
Coordinates (TAIR10) chr5:-:23558349..23559313
Molecular Weight (calculated) 20401.40 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.43
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MLNLQVTGKT ILSSIRCQRK MSSTCSSYAF GPYKIDPREV FYATPLSYAM VNLRPLLPAH VLVCPRRLVP RFTDLTADET SDLWLTAQKV GSKLETFHNA
101: SSLTLAIQDG PQAGQTVPHV HIHILPRKGG DFEKNDEIYD ALDEKEKELK QKLDLDKDRV DRSIQEMADE ASQYRSLFDC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)