AT5G57210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G29950.1); Has 1722 Blast hits to 1340 proteins in 214 species: Archae - 0; Bacteria - 4; Metazoa - 717; Fungi - 361; Plants - 287; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23181088..23183705 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82869.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||
| Length | 737 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIHEETQIS TTQDPPCTSN DASPPQDHRF EKLRGVRWRI NLGILPSSPS STIDELRRVT ADSRRRYAAL RRRLLIDPHL PKKGTNSPDL TIDNPLSQNP 101: DSTWGRFFRN AELEKTLDQD LSRLYPEHGS YFQSSGCQGM LRRILLLWCL KHPEIGYRQG MHELLAPLLY VLQVDVQYLT EVRSNYEDQF VDLFDELAFQ 201: ERDSGAYDFD IKKVLDDSME DEEEDGPPSG STKKKKPKSF DELDTETQTA VLLSDAYGGE GELGIVLSDK FMEHDAYTMF DALMYGGSSL GSVSVANFFI 301: YSAPNDSITG LPPVIEASGA LYHLLSLVDA SLHSHLVELG VEPQYFALRW LRVLFGREFP LSNLLIVWDE IFSADNSEVE RGVEADLGCE FRILSSPRGA 401: LVAGMAVSMI LYLRSSLLAT ENATSSLKKL LNFPEDIDLS KVIEKAKTLQ SLALEINARR DLIPKGPRKP MRGHSLSVDS ISLGSSPVGI EPESYWEEKW 501: RVLNSAEEEE RRKKALQRPK AGKKSWSERV KLRLSRTESD PSPAEAKRSG NKPHIRRSLL DDLSRQLGEK EIEPPEFPNP DTDIERSSTV SDTPSAEYED 601: NSSDKGKSEN HMDLPLSIPE NEPEAKSGMN IFRERKILSG KFQRLWRLGR NLSGEETSET KEAKQVDSED GKTDSDSTSG PGDSLKNTGR SMLEHIKVIE 701: SVLELSSPEN MTENGKLTVE EALRELRRLG NMLLSEM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)