AT5G57180.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chloroplast import apparatus 2 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
chloroplast import apparatus 2 (CIA2); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 102 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 7; Plants - 54; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23168393..23169523 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 41238.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.69 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||
| Length | 376 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS 101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES 201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS 301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNVC LTLISS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)