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AT5G57150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II36eggNOG:ENOG410YDYSEMBL:CP002688EnsemblPlants:AT5G57150
EnsemblPlants:AT5G57150.1entrez:835821ExpressionAtlas:F4KAJ4Gene3D:4.10.280.10
GeneID:835821Gramene:AT5G57150.1hmmpanther:PTHR31945hmmpanther:PTHR31945:SF9
InterPro:IPR011598ncoils:CoilPaxDb:F4KAJ4Pfam:PF00010
Pfscan:PS50888PRIDE:F4KAJ4PROSITE:PS50888ProteinModelPortal:F4KAJ4
Proteomes:UP000006548RefSeq:NP_568850.1SMART:SM00353SMR:F4KAJ4
STRING:3702.AT5G57150.4SUPFAM:SSF47459TAIR:AT5G57150UniGene:At.49181
UniGene:At.49182UniGene:At.69713UniProt:F4KAJ4
Coordinates (TAIR10) chr5:+:23152361..23154872
Molecular Weight (calculated) 27934.90 Da
IEP (calculated) 4.34
GRAVY (calculated) -0.38
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)