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AT5G57100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.952
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleotide/sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide/sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT5G55950.1); Has 2192 Blast hits to 2189 proteins in 223 species: Archae - 0; Bacteria - 8; Metazoa - 527; Fungi - 398; Plants - 1015; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AB023042EMBL:CP002688
EnsemblPlants:AT5G57100EnsemblPlants:AT5G57100.1entrez:835814GeneID:835814
GO:GO:0008643GO:GO:0016021Gramene:AT5G57100.1hmmpanther:PTHR11132
hmmpanther:PTHR11132:SF75InterPro:IPR004853KEGG:ath:AT5G57100OMA:PSIVFAE
Pfam:PF03151PhylomeDB:Q9LU76Proteomes:UP000006548RefSeq:NP_200520.1
STRING:3702.AT5G57100.1TAIR:AT5G57100TMHMM:TMhelixUniGene:At.9675
UniProt:Q9LU76
Coordinates (TAIR10) chr5:-:23106563..23108440
Molecular Weight (calculated) 43152.00 Da
IEP (calculated) 10.34
GRAVY (calculated) 0.38
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLTPKMFSS WLRQDVKKIL KRKDSDAGER GKALEDLRAS LFNRFRSPET PKRQQQQQHR ICGPTVALTF NFVVAISIIF MNKWVLKNIG FEFPVFLTFI
101: HYIVAYLLMA LLKSFSLLPA SPPSTKSSLL PLYTLGIVMS LSTGLANVSL KYNSVGFYQM AKIAVTPSIV FAEFLWYRKR VSFMKVVSLT VVSVGVAVAT
201: VTDLQFSLFG ACVAFAWIIP SATNKILWSN MQQRENWTAL ALMWKTTPIT LLFLVSMIPF LDPPGALSFN WSLTNTSAIL VSALLGFFLQ WSGALALGAT
301: SAITHVVLGQ FKTCVLLLGN YYIFGSNSGF ISVGGAFVAI MGTSLYTYLN TRGQSLKTSS SSSALSEKKS RFSDLKDDDK NLEPYGSEAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)