AT5G56960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G57150.4); Has 2180 Blast hits to 2174 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 44; Plants - 1927; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23038703..23041174 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52747.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.73 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 466 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMHLILSCSY LISMDGYYNE ASEEPSSSSS SGSLARSLFH EYRQSVIPLQ NGHVPSMAFM NNLPYVEIRP QESQRLAFND TQRLFYQMKI EASLREWFPE 101: DFNRKSSPAN SDYLRPPHYP SSSSSSLSPN NISEYSSLLF PLIPKPSTTT EAVNVPVLPP LAPINMIHPQ HQEPLFRNRQ REEEAMTQAI LAVLTGPSSP 201: PSTSSSPQRK GRATAFKRYY SMISDRGRAP LPSVRKQSMM TRAMSFYNRL NINQRERFTR ENATTHGEGS GGSGGGGRYT SGPSATQLQH MISERKRREK 301: LNESFQALRS LLPPGTKKDK ASVLSIAREQ LSSLQGEISK LLERNREVEA KLAGEREIEN DLRPEERFNV RIRHIPESTS RERTLDLRVV LRGDIIRVDD 401: LMIRLLEFLK QINNVSLVSI EARTLARAEG DTSIVLVISL RLKIEGEWDE SAFQEAVRRV VADLAH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)