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AT5G56800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein with RNI-like/FBD-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT5G56560.1); Has 758 Blast hits to 735 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB013392EMBL:CP002688EMBL:DQ447082EnsemblPlants:AT5G56800
EnsemblPlants:AT5G56800.1entrez:835782Gene3D:3.80.10.10GeneID:835782
Gramene:AT5G56800.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF112InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT5G56800Pfam:PF07723
Pfam:PF08387PhylomeDB:Q9FJT3Proteomes:UP000006548RefSeq:NP_200491.1
SMART:SM00579SMR:Q9FJT3SUPFAM:SSF52047TAIR:AT5G56800
UniGene:At.55594UniProt:Q9FJT3
Coordinates (TAIR10) chr5:+:22972989..22974208
Molecular Weight (calculated) 39682.20 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.11
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTQKKSFGR LSAVINPLDY IINPLDNPWF DLSEVSIESC YGSQTLPRSL RSRHWNLKTL KLKKLSFVDT DAYMWFESLK TLHLLSVRFS DDKSVQRLLS
101: VCPKLEDLVV KRTTYVNVRI FSINVPSLRS LSIDYSWAVS RPADVHGFVI DAPSLRFMNI KDHFSNLLQF ENMPKLVKAN VEVDCDLSEK FIGSITSIQH
201: ISLCSKNSKI PYPSGTSFFY LEHLELCTCS QDWWNLLNRI LEDAPRLQVL KLKLGNCVQC STELMDYWNE PCSVPKCLSS HLEIFEWRHY KGTKQERKVA
301: KYILAKASCL KVAIFSSVCI EKNLIFKKLE NVDRGSKACE LVFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)