AT5G56750.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.853 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : N-MYC downregulated-like 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
N-MYC downregulated-like 1 (NDL1); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 3 (TAIR:AT2G19620.1); Has 776 Blast hits to 775 proteins in 111 species: Archae - 2; Bacteria - 48; Metazoa - 563; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:22957986..22960606 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38300.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||
| Length | 346 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTDSYGAVSV DVGTIYLGGK EHRVKTASGV VSVIVYGDRE KPALITYPDL ALNHMSCFQG LFFCPEAASL LLHNFCIYHI SPPGHELGAA PICPNDSVPS 101: AENLADQILE VLNFFGLGVV MCMGVTAGAY ILTLFAMKHR ERVLGLILVS PLCKAPSWSE WFYNKVITNL LYYYGMCGVV KEFLLQRYFS KEVRGNVEIP 201: ESDIAQACRR LLDERQGINV LRFLDAIDRR PDISSGLKKL KCRTLIFIGD QSPFYSEAVH MAATLDRGYC ALVEVQACGS MVTEEQPHAM LIPMEYFLMG 301: YGLYRPSLFS ESPRSPLSPS CISPELLSPE SMGLKLKPIK TRISAA |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)