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AT5G56750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.853
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : N-MYC downregulated-like 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
N-MYC downregulated-like 1 (NDL1); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 3 (TAIR:AT2G19620.1); Has 776 Blast hits to 775 proteins in 111 species: Archae - 2; Bacteria - 48; Metazoa - 563; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSPFeggNOG:KOG2931EMBL:AB013392EMBL:AY050428
EMBL:AY087544EMBL:AY090332EMBL:CP002688EnsemblPlants:AT5G56750
EnsemblPlants:AT5G56750.1entrez:835777ESTHER:arath-At5g56750Gene3D:3.40.50.1820
GeneID:835777GO:GO:0016021GO:GO:0060918Gramene:AT5G56750.1
hmmpanther:PTHR11034hmmpanther:PTHR11034:SF23HOGENOM:HOG000237602InterPro:IPR004142
InterPro:IPR029058KEGG:ath:AT5G56750OMA:CISPELPPANTHER:PTHR11034
Pfam:PF03096PhylomeDB:Q9FJT7Proteomes:UP000006548RefSeq:NP_200486.1
SMR:Q9FJT7STRING:3702.AT5G56750.1SUPFAM:SSF53474TAIR:AT5G56750
tair10-symbols:NDL1TMHMM:TMhelixUniGene:At.9276UniProt:Q9FJT7
Coordinates (TAIR10) chr5:+:22957986..22960606
Molecular Weight (calculated) 38300.80 Da
IEP (calculated) 6.69
GRAVY (calculated) 0.18
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDSYGAVSV DVGTIYLGGK EHRVKTASGV VSVIVYGDRE KPALITYPDL ALNHMSCFQG LFFCPEAASL LLHNFCIYHI SPPGHELGAA PICPNDSVPS
101: AENLADQILE VLNFFGLGVV MCMGVTAGAY ILTLFAMKHR ERVLGLILVS PLCKAPSWSE WFYNKVITNL LYYYGMCGVV KEFLLQRYFS KEVRGNVEIP
201: ESDIAQACRR LLDERQGINV LRFLDAIDRR PDISSGLKKL KCRTLIFIGD QSPFYSEAVH MAATLDRGYC ALVEVQACGS MVTEEQPHAM LIPMEYFLMG
301: YGLYRPSLFS ESPRSPLSPS CISPELLSPE SMGLKLKPIK TRISAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)