AT5G56700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.540 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FBD / Leucine Rich Repeat domains containing protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FBD / Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G60610.1); Has 1002 Blast hits to 980 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1000; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22941991..22943378 | ||||||||
| Molecular Weight (calculated) | 41033.80 Da | ||||||||
| IEP (calculated) | 6.73 | ||||||||
| GRAVY (calculated) | 0.03 | ||||||||
| Length | 360 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKISDLSDE LLVKILSFLP TKEAVSTSVC RNNGSFFGCG CPNSSSTLVM DLKSWVRIAV SRCVRELSIS LHDTTAAVSL PSSLYTCKSL VTLKLYGKKV 101: LLDVPRTVFL PSLKTLQLER LRYSDEDSLR LLLSYCPVLE DLSIVREDYD NLRALVVIVP SLQRLSLEIP GNCSSDGYVI VTPSLKYFKV VDYRESMSYL 201: IEQMPELEEA DIVVLQYPEK LLESVTFFKR LSIRVIFNTY TETVYRDGIV FNRLENLKLC ICNGDWSKLL IQFLKDSPNL RVLNLLVDDY PSSLGDYEPV 301: RWKNNKSSVP KCLLESLETF EFAGYIGTPE ERDFLSYIFK HARCLKSSSI LSRPERYHGI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)