AT5G56690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.496 plasma membrane 0.415 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FBD, F-box and Leucine Rich Repeat domains containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FBD, F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD / Leucine Rich Repeat domains containing protein (TAIR:AT5G56700.1); Has 2091 Blast hits to 2055 proteins in 38 species: Archae - 0; Bacteria - 13; Metazoa - 7; Fungi - 0; Plants - 2069; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22939723..22941099 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46616.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.70 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEISGLPDD LLVKILAFLP TKVAISTSVL SKQWRFLWMW LPKLKYDDYD DITDGFNSVS AFQTYRDFIA KNLPLHRAPI IESLSLGFRC GTLQPEDLKS 101: WVEVAVSRSV RELSILAYYR NNYALSSSSL YTCKSLVTLK GFNIRVDVPP TVCLLPSLRT LELKRVRYLN EDSLRMLLSF CPVLEYLSIE RHDNDNLRGL 201: VVDVPSLRRL SLTSYTGCSS DDYVIVTPSL KYFKAFDYRS EISSYKIEKI PELEEADISI ERNPEKLFVY FKSIKCLSLQ VDFNSKEEPG YDSGIVFNHL 301: EELTPYINDA NWSKLLFRLL NDSPKLRVLE ISNSKSFYKE KIGEYLPVSW SKNQGSVPKC FLNSLETFRV KWYYSEEQED RDFLSLIFKH ARCLKSTSIL 401: HR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)