AT5G56640.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.991 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : myo-inositol oxygenase 5 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Myo-Inositol Oxygenase gene family | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
myo-inositol oxygenase 5 (MIOX5); FUNCTIONS IN: inositol oxygenase activity, iron ion binding; INVOLVED IN: syncytium formation; LOCATED IN: cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: myo-inositol oxygenase 4 (TAIR:AT4G26260.2); Has 490 Blast hits to 488 proteins in 159 species: Archae - 0; Bacteria - 27; Metazoa - 132; Fungi - 132; Plants - 97; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:22927534..22929638 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 36546.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 314 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNISVENPVF VHEDSTTQKT GELRLDSDIP MSKISSDDEV FLAPEMNAFG RQFRDYTDTN SERQKSVEHF YATQHTNQTL DFVQKMRSEY GKLDKMVMNI 101: WECCELSKEV VDESDPDLDE PQIQHLLQSA EAIRKDYPNE DWLHLTALIH DLGKVLTLPQ FGGLPQWAVV GDTFPVGCAF DESNVHHKYF MENPDFNNPK 201: YNTKAGIYSE GCGLENVLMS WGHDDYMYLV AKENGSTLPS PGLFIIRYHS FYPLHKAGAY THLMNEEDKE NLKWLHVFNK YDLYSKSKVH VNVEKVKPYY 301: MSLIKKYFPE NLRW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)