AT5G56510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 12 (PUM12); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22881721..22883842 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68675.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 596 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQRRGNELD EFEKLLGEIP KVTSGNDYNH FPICLSSSRS QSIKKVDQYL PDDRAFTTSF SEANLHFGIP NHTPESPHPL FINPSYHSPS NSPCVYDKFD 101: SRKLDPVMFR KLQQVGYLPN LSSGISPAQR QHYLPHSQPL SHYQSPMTWR DIEEENFQRL KLQEEQYLSI NPHFLHLQSM DTVPRQDHFD YRRAEQSNRN 201: LFWNGEDGNE SVRKMCYPEK ILMRSQMDLN TAKVIKYGAG DESQNGRLWL QNQLNEDLTM SLNNLSLQPQ KYNSIAEARG KIYYLAKDQH GCRFLQRIFS 301: EKDGNDIEMI FNEIIDYISE LMMDPFGNYL VQKLLEVCNE DQRMQIVHSI TRKPGLLIKI SCDMHGTRAV QKIVETAKRE EEISIIISAL KHGIVHLIKN 401: VNGNHVVQRC LQYLLPYCGK FLFEAAITHC VELATDRHGC CVLQKCLGYS EGEQKQHLVS EIASNALLLS QDPFGNYVLQ YVFELQLQWA TFEILEQLEG 501: NYTELSMQKC SSNVVEKCLK LADDKHRARI IRELINYGRL DQVMLDPYGN YVIQAALKQS KGNVHALLVD AIKLNISSLR TNPYGKKVLS ALSSKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)