AT5G56490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D-arabinono-1,4-lactone oxidase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
D-arabinono-1,4-lactone oxidase family protein; FUNCTIONS IN: D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: D-arabinono-1,4-lactone oxidase family protein (TAIR:AT1G32300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22871507..22873420 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64127.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.95 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 577 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSFWLSLIFC FFTFASSSPP DDPVNCEFGN TMCTVTNSYG AFPDRSICKA AKVEYPRTEA ELVSIVAAAT RAGQKMRVVT RYSHSFPKLV CTDGKDGTLI 101: STKFLNHVVT TNPEAKTLTV ESGVTLRQLI EEAAKFDLAL PYAPYWWGLT VGGMMGTGAH GSSLWGKGSA VHDYVTEIRL VSPGLASDGY VKVQVLSETI 201: DPEEFRAAKV SLGVLGVISQ VTFELQPMFK RSLNYVMRND SDFGDQAVSF GERHEFADFL WLPSQGKVVY RMDGRVPLNT SGDGLFEFFP FRSQLSLVLA 301: IDRSLEESEE SLEDANMKCV RAKLVSSSMF LMSYGVTNNG LIFTGYPVIG MQNHMMSSGS CLDSRQDGLI TACPWDPRIK GQFFHQTTFS VSLTNVKSFI 401: NDIKALVKIE PKSLCVLEGS NGILIRYVTS SLAFLGKEEK ALDFDLTYYR SKNDPLAPRL YEDYIEEIEQ MAIFKYNALP HWGKNRNLAF DGAIRKYKNA 501: NAFLKVKEKF DSLGLFSTEW TDQILGLKGN VTIVKQGCAL EGLCICSEDS HCAPTKGYLC RPGKVYREAR VCTRVSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)