AT5G56400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22846069..22847615 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52541.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.60 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLIRFLLVF QGKIQMNESR KKLNCQSRQF NVDKISDLPE DLLVHILSLL PTTNDIVATS GVSKRWESLW TKVHKLRFND RIYDGKRYDS FLHFVEKSLI 101: LHKAPTLVSL RLSVGPKCTA DDIGLWIKLA LDRNICELII KHYPDHGHIR LSRRLCDSKT LVSLKLKNAI LGAIWLPTCF ISLKTLHLRY VKYSGDESVR 201: TLISSCPSLR NLVVKRHNED NVKRFAIIVR YLQSLTVYLS PLHGVADSDA YVINTPNLKY LNIKDHYTDL CSFEDMPYLD EANLDVAFTH TENFFESLTS 301: VKKLSLCLKK SNAQYPEGII FSQLDHLELC TCDDSKWLNI LAMLLPDSPK LRVLKLNDKN HDFVDKYCSC TWNQQPSYVP ECLTKSLEIF EWRNYKATFR 401: ERDVAVYILK NSTCLKKTVI SPKLKISGEI CDHHIIREDL ASLFMGSSSC ELKFD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)