AT5G56200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2H2 type zinc finger transcription factor family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2H2 type zinc finger transcription factor family; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G04390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22747768..22749249 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54530.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.06 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||
| Length | 493 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQLRGYKTN CGFSLGKPRF GSIKVKIPRI KPEIEEDQVE EDDEAKNIGL EEEENDHEAK SMDLEQGDVE EEEGEEKKHI CCECGKRFVS GKALGGHKRI 101: HVLETRKFSM MRPKMVSGMV GRSERGDLEV ACCVCYKKFT SMKALYGHMR FHPDRGWKGV LPPPPLLPHP LGNSSSSTLD HDDEFISSDY DDDDDFDDDD 201: DDDDDENSEL WDSNLELENV VESIKGWSTK GKRGRRGDLK FDEADLKDPP LEDVKDIDDA NGLLFLATTA EAAANLNVAE TSASRSVEEK YLEMVKKRKK 301: KQKRLSEMEK ESSTSTHHDH QLDQVVVVAA EEGGGAGARE KHVCVTCNKS FSSYQALGGH RASHNKVKIL ENHQARANAE ASLLGTEAII TGLASAQGTN 401: TSLSSSHNGD HVCNICHKSF STGQALGGHK RCHWTAPVST VAPTTVPTAA PTVPATASSS QVTETVQEVK KLKRRVLEFD LNELPPNEEE ERV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)