AT5G56060.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.992 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Domain of unknown function (DUF2431) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: tRNA binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase alpha chain (InterPro:IPR002319), Domain of unknown function DUF2431 (InterPro:IPR019446); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF2431) (TAIR:AT5G25030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:22704008..22704892 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 24868.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.32 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||
| Length | 220 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFMGTINLQ QYSNKQKILL VGEGDFSFSL SLARVFGSAT NITATSLDTR EELGIKYTDG KANVEGLELF GCTVVHGVNV HSMSSDYRLG RYDRIIFNFP 101: HSGLGFGSEH DIFFIMLHQG LVRGFLESAR KMLKDEDGEI HVTHKTTDPF NRWGIETLAG EKGLRLIGEI EFHKWAFPGY SNKKGGGSNC NSTFLLRRIL 201: SLLDYHVYSS VYSFRIYMII |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)