AT5G55770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G55780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22571645..22573732 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80735.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||
| Length | 695 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQGEEENTNI TKIQISFVAT MSSVGVFRKE EIDGNPYFVI LTETKVDQKR RKKTYFLCPA ARIKYLKFKR KMLENYDYGD DNEDDDNDAD EDAKEDGDGH 101: DKLYPFNSSS HFPNTRRGDR QGKSLLDCYL PGICKNPVVP LFRYNDKEPY CHISQCGACK GKMLDTSKDY ACLQCQRKFH RECVESPLEI KHPSHPFHSL 201: RLYGLPTFQK CFCCETSLYD MFYHCATCDL SMSPVCALKP VPIVIEQSRS HHHPLTFFPA QALICHICAV IKKFDPAYIC VQCVFVVHKN CIGFPHVIRI 301: SRHSHRISFT SSLPSRKLSC GVCRKQVDNK YGAYSCLECD AYFVHSSCAT HPKVWDGKEL EGVPEEDDII DDGEPFERIA DGIILHPFHS HHLRLEISIA 401: YDANKYCRGC ALPIYEGQFY SCMECDFILH ESCANAPRMK RHPLYPHPLT LKVAKHNIDG GIFHCSECRR VGNGFFYECG KENNIVQLDL RCASIIEPFD 501: YQGHEHPLFL PWETEKETRC QMCKYDSGHS KLICMDCDYS ICFRCATFPY MARYKHDSHF LTISNGKEES DQQDWCEICE RKIVKVKERG NVLWNQKEAL 601: RYRCNVCCTT LHIDCLHGKE MYIKPRETER DHLTFHTFRD MERIFIRVHL NSSLSRPVCS RCNRRCPFPI FFKGLRLIYC SLDCVRNLPR FSLLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)