suba logo
AT5G55440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF295)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT5G67040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB015479EMBL:CP002688EMBL:DQ447078EnsemblPlants:AT5G55440
EnsemblPlants:AT5G55440.1entrez:835637GeneID:835637Gramene:AT5G55440.1
hmmpanther:PTHR31681hmmpanther:PTHR31681:SF3InterPro:IPR005174KEGG:ath:AT5G55440
OMA:IPEAGWEPfam:PF03478PhylomeDB:Q9FJ66Proteomes:UP000006548
RefSeq:NP_200355.1TAIR:AT5G55440UniGene:At.55564UniProt:Q9FJ66
Coordinates (TAIR10) chr5:+:22465718..22466989
Molecular Weight (calculated) 41514.50 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.39
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MALFFSRISK LSGRRNNARF FSSLPPSPCL VLTTKKLRGS PEEGLIVHHK LFEPATEKKV YGNEKKYPKE LHGAPLLGAS KGWVAFFKEK DISVHLTDLY
101: KPCVSSPRVI SLPSLKLDYK PATHATEVCL SSSDPVQDDY YVAAKFNDYH VSVCRPRWDS DWTHNETGYS LLPASELMYS KRDKAFHFTS FKGLYMGSLY
201: LSKKDEIKYK EIRLRNLPKI PEAGWEMLDK CSMTNHLVDS PSGELFFIKW YTQCIHKEDE DGDLECLHSK TKRFMVFRQD GMSKDFGYTE DIGDLCIFLG
301: KSEAFCVTAS LYPGLKPNSI YYLGPRFGSY DLASGTNSSF TFDRFGKPSL VVPYWIHSTS SLSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)