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AT5G54880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DTW domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DTW domain-containing protein; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3148eggNOG:KOG4382EMBL:AB005232EMBL:AY052662
EMBL:BT001145EMBL:CP002688EnsemblPlants:AT5G54880EnsemblPlants:AT5G54880.1
entrez:835579GeneID:835579Gramene:AT5G54880.1hmmpanther:PTHR21392
hmmpanther:PTHR21392:SF2HOGENOM:HOG000091017InterPro:IPR005636KEGG:ath:AT5G54880
OMA:IDASDCQPfam:PF03942PhylomeDB:Q9FFU2Proteomes:UP000006548
RefSeq:NP_568814.2SMART:SM01144STRING:3702.AT5G54880.1TAIR:AT5G54880
UniGene:At.26491UniProt:Q9FFU2
Coordinates (TAIR10) chr5:+:22291920..22293104
Molecular Weight (calculated) 44445.80 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.27
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSSGQMMGH VVARTQMILS RSNFADCIRC QGVRVSKTLK MGTKRPTCPS CDKPSQLCLC KKMRSPCFDN QVSITILQHS LERKHALNST RIARLGLKNV
101: GVTTVFDVHD EAEFLIRVIG SGCSKIDTNH LDSEYRVENV ASLELDDSFK LGSSGNVENL ESEKNVVLVD HGSLEIAESL NLSQHLSEIS YRDSRVRDKI
201: GSYEEDLIKI CMKKHGVISN VSHSLMLETN VKVLSFDHIL ASPAAMDVLA KGFMVTKFSE GKQEFELEVP PGSALLFPSE ESVKINYLKE KEELKVRNLI
301: VLDGTWSKAR RIYLENPWLK LLRCHVKLEI EGTSLYKEVR RQPRAGCLST IESIVYAMKE IGEDPEGLDN MLNVFESMVE DQRRCKDENF NKII
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)