AT5G54440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CLUB | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative TRAPPII tethering factor required for cell plate assembly during cytokinesis. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CLUB (CLUB); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3758 (InterPro:IPR022233); Has 362 Blast hits to 266 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 118; Plants - 63; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22100056..22107695 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 140689.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.10 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1259 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MANYLAQFQT IKNSCDRLVA AVEDVCDLWP TVKGLFEEHQ PLKRAFLTNK TRNPVFVENL PVEFILTTDA RLRSRFPQEQ YLFWFREPYA TIVLVTCEDL 0101: DEFKNILKPR LKLIVQNDER EWFIVFVSKA HPSNDQATKN VKKVYAKLEV DFSSKKRERC CKLDVHGPEG NFWEDLELKI TECIRNTLDR RAQFYEDEIR 0201: KLSEQRFMPI WNFCNFFILK ESLAFIFEMA HLHEDALREY DELELCYLET VNMPGKQRDF GGFDGEDDQA VLLKPGSKPL TQIVQDDSFR EFEFRQYLFA 0301: CQSRLLFKLN RPFEVASRGY SFVISFAKAL TLHESVLPFC MREVWVITAC LALIEATASH HHDGVVAPDI EKEFFRLQGD LYSLSRVKFM RLGYLIGYGT 0401: DIEKSPLNSA CLSMLPWPKP AVWPSLPQDA SSEVLEKEKT ILQATSRTKH FGIQRKALPL EPSVLLRVAN RRRASLSTGN IPEMFDGRPS FTEGSGLEAS 0501: PRTPSSLKVQ APPMSRTNSS PGNFESPLDR PMRLAEIFVA AEHALRLTIS DHDLLKTLSS IQDFENKYLN LTKGAAENYH RSWWKRHGVV LDGEIAAVCF 0601: KHGKYDLAAN SYEKVCALYA GEGWQDLLAE VLPNLAQCQK ILDDQAGYMS SCVRLLSLDK GLFSSKERQA FQSEVVTLAH SEMKNPVPLD VSSLITFSGN 0701: TGPPLQLCDG DPGNLSVTVW SGFPDDITLD SLSLTLVATN NTDEGGQALK SSAATVLNPG RNTITFALPP QKPGSYVLGV VTGQIGRLRF RSHSFSKGGP 0801: ADSDDFMSYE KPTRPILKVS KPRALVDLAA AVSSALLINE AQWIGIIVRP IAYSLKGAIL HIDTGPGLKI EDSYGIEMER YMDADCDTGA SKAEVFVEDS 0901: PVSSKRDSEV LNLCDGKIVF SDWASNVSSI LWVPVRALSE KLARGSSSVT PLKQDILEGM RTVALKLEFG VHHNQIFERT IAAHFTDPFD VTTRVANKCN 1001: DGTLVLQVML HSLVKANLIV LDVWLDLQDG FIHGQNDGRP TSTFFPLVVS PGSRAAVVFS ICLDKSMSSE GKDLQLPESI LNIKYGIHGD RAAGAHRPVD 1101: ADHSETDTEG RDLVFKSAIV LQRPVLDPCL TVGFLPLPSD GLRVGKLITM QWRVERLKEL KESEAVEQQH DEVLYEVNAN SENWMIAGRK RGHVSLSEEQ 1201: GSRVVISILC VPLVAGYVRP PQLGLPNVEE ANVSSNPSGP HLVCVLPPLL SSSYCLPVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)