AT5G53810.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : O-methyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:21850329..21852762 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41947.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||
| Length | 378 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANHLQVPLT KPDRVKEEQE VEEEARLLAR RLANAAASPM VLKAALELGV IDTITTVGGG DLWLSPSEIA LRLPTKPCNL EAPALLDRML RFLVSHSVLK 101: CRTVIEENGQ TGKVERVYAA EPVCKYLLNK SDDVSGSFAS LFMLDLSDVF IKTWTHLEDV ILEGRDAFSS AHGMKLFEYI QADERFGKVF NRAMLESSTM 201: VTEKVLKFYE GFKDVKTLVD VGGGLGNTLG LITSKYPHLI GINFDLAPVL ANAHSYPGVN HVAGDMFIKI PKGDAIFMKW ILHDWTDEQC VAILKNCWKS 301: LEENGKLIIV EMVTPVEAKS GDICSNIVFG MDMTMLTQCS GGKERDLYEF ENLAYASGFS RCAIVCAVYP FSVIEIYK |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)