AT5G53510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.902 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : oligopeptide transporter 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
oligopeptide transporter | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
oligopeptide transporter 9 (OPT9); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 1 (TAIR:AT4G27730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21738849..21742082 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83575.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 741 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEIVEDSSR VMEIEGQNDD LDRCVVEEVE LTVPKTDDPT LPVLTFRMWT LGLGACIILS FINQFFWYRQ MPLTISGISA QIAVVPLGHL MAKVLPTRMF 101: LEGSKWEFSM NPGPFNVKEH VLITIFANSG AGTVYATHIL SAIKLYYKRS LPFLPAFLLM ITTQFLGFGW AGLFRKHLVE PGEMWWPSNL VQVSLFSALH 201: EKEKKKKGGM TRIQFFLIVL VTSFAYYILP GYLFTMITSI SWICWLGPKS VLVHQLGSGE QGLGIGAIGI DWATISSYLG SPLASPLFAT INVTIGFVVI 301: MYVATPICYW LNIYKAKTYP IFSSGLFMGN GSSYDVLSII DKKFHLDRDI YAKTGPINMS TFFAVTYGLG FATLSATIVH VLLFNGRDLW KQTRGAFQRN 401: KKMDFHTRIM KKNYREVPMW WFYVILVLNI ALIMFISFYY NATVQLPWWG VLLACAIAVF FTPLIGVIAA TTNQEPGLNV ITEYVIGYLY PERPVANMCF 501: KVYGYISMTQ ALTFIQDFKL GLYMKIPPRS MFMAQVVGTL VSVVVYTGTA WWLMVDIPHL CDKSLLPPDS EWTCPMDRVF FDASVIWGLV GPRRMFGNLG 601: EYAAINWFFL VGAIAPFFVW LATKAFPAHK WISKIHFPVI LGATSMMPPA MAVNFTSWCI VAFVFGHFLY KYKRQWWKKY NYVLSGGLDA GTAFMTILIF 701: LSVGRKGIGL LWWGNADDST NCSLASCPTA KGVIMHGCPV L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)