AT5G53090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.446 cytosol 0.316 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: multicellular organismal development, oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G27760.1); Has 56097 Blast hits to 56064 proteins in 2957 species: Archae - 483; Bacteria - 37629; Metazoa - 3929; Fungi - 2937; Plants - 1611; Viruses - 0; Other Eukaryotes - 9508 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21523424..21525561 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41945.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.22 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||
| Length | 375 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSETSSLTK KMKKKKEGLG WIESIKGWSC VFHEFLFQRF MASHLQNPLP LPSLNHLTCI VTGSTSGIGR ETARQLAEAG ARVVMAVRNT KAAHELIQQW 101: QKEWSGKGIP LNLEAMELDL LSLDSVVGFC NLWNARLSPL HVLINNAGIF SMGEEQKFSK DGYEQHMQVN HLAPALLSLL LLPSLIRGSP SRIINVNSVM 201: HYVGFVDPDD MNVVSGKRKF TSLVGYSGSK LAQVMFSNVL LKRLPLETRI SVVCLSPGIV LTNVARDLPR YVQVQYALIP YFIFSPQEGS RSTLFSATDA 301: QIPEHCEKLK TEDKPVCTFI SQNCKHTKPS EEAHNVETAE RVWEKTIKLI GLPLDAVERL IEGEEVQCRY GTHQQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)